Create a DrugResponseAssay object — DrugResponseAssay • OncoProfilingTools

Creates a `DrugResponseAssay`, a `SummarizedExperiment` subclass for drug response data.

Usage

DrugResponseAssay(
  data,
  rowData = NULL,
  colData = NULL,
  metadata = list(),
  assay_name = "response",
  unit = "logfoldchange",
  source = NA_character_,
  source_file = NA_character_
)

Arguments

data: A numeric matrix-like object with treatments/drugs as rows and samples/models as columns.
rowData: Optional treatment/compound-level metadata. Must have one row per treatment/drug.
colData: Optional sample/model-level metadata. Must have one row per sample/model.
metadata: Optional assay-level metadata list.
assay_name: Name of the primary assay. Defaults to `"response"`.
unit: Character string describing the response unit.
source: Optional character string describing the data source.
source_file: Optional character string storing the source file path.

Value

A `DrugResponseAssay` object.