Create a donut plot — plot_donut • OncoProfilingTools

Creates a donut plot from assay-level metadata stored in an `OncoExperiment`.

Usage

plot_donut(object, variable, assay, variable_expr = substitute(variable), ...)

Arguments

object: An `OncoExperiment` object.
variable: Metadata field to plot. Can be unquoted, a character string, or an enum value such as `ModelMetadataFields$OncotreeLineage`.
assay: A single character string specifying which assay experiment to use. For example, `"Expression"` or `"PRISM"`.
variable_expr: Captured unevaluated variable expression. Internal.
...: Additional arguments passed to methods.

Value

A `ggplot` object.

Examples

if (FALSE) { # \dontrun{
plot_donut(exp, ModelMetadataFields$OncotreeLineage, assay = "Expression")
plot_donut(exp, "Sex", assay = "Expression")
plot_donut(exp, OncotreeLineage, assay = "Expression")
} # }